Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
SF3A1Q15459 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.08■□□□□ 0.64
SF3A1Q15459 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.08■□□□□ 0.64
SF3A1Q15459 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.08■□□□□ 0.64
SF3A1Q15459 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.08■□□□□ 0.64
SF3A1Q15459 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.08■□□□□ 0.64
SF3A1Q15459 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
SF3A1Q15459 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
SF3A1Q15459 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SF3A1Q15459 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.08■□□□□ 0.64
SF3A1Q15459 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC19.07■□□□□ 0.64
SF3A1Q15459 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SF3A1Q15459 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.07■□□□□ 0.64
SF3A1Q15459 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.07■□□□□ 0.64
SF3A1Q15459 AL450487.1-201ENST00000426799 995 ntBASIC19.07■□□□□ 0.64
SF3A1Q15459 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.07■□□□□ 0.64
SF3A1Q15459 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 AC108073.2-201ENST00000464002 357 ntBASIC19.07■□□□□ 0.64
SF3A1Q15459 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.07■□□□□ 0.64
SF3A1Q15459 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.07■□□□□ 0.64
SF3A1Q15459 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.07■□□□□ 0.64
SF3A1Q15459 AC087641.1-201ENST00000557561 1021 ntBASIC19.07■□□□□ 0.64
SF3A1Q15459 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.07■□□□□ 0.64
SF3A1Q15459 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.07■□□□□ 0.64
SF3A1Q15459 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.07■□□□□ 0.64
SF3A1Q15459 AC104692.2-201ENST00000603054 253 ntBASIC19.07■□□□□ 0.64
SF3A1Q15459 AC117500.6-201ENST00000624871 588 ntBASIC19.07■□□□□ 0.64
SF3A1Q15459 PGM5P2-202ENST00000637225 1043 ntBASIC19.07■□□□□ 0.64
SF3A1Q15459 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SF3A1Q15459 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 AC132872.4-202ENST00000622924 2756 ntBASIC19.07■□□□□ 0.64
SF3A1Q15459 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.07■□□□□ 0.64
SF3A1Q15459 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
SF3A1Q15459 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.07■□□□□ 0.64
SF3A1Q15459 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SF3A1Q15459 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.07■□□□□ 0.64
SF3A1Q15459 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SF3A1Q15459 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
SF3A1Q15459 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SF3A1Q15459 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.06■□□□□ 0.64
SF3A1Q15459 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SF3A1Q15459 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SF3A1Q15459 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SF3A1Q15459 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SF3A1Q15459 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 RPS2P28-201ENST00000314255 741 ntBASIC19.06■□□□□ 0.64
SF3A1Q15459 AC004870.1-201ENST00000315132 882 ntBASIC19.06■□□□□ 0.64
SF3A1Q15459 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SF3A1Q15459 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.06■□□□□ 0.64
SF3A1Q15459 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
SF3A1Q15459 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.06■□□□□ 0.64
SF3A1Q15459 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms