Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
HNF4AP41235 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HNF4AP41235 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
HNF4AP41235 AC096734.2-201ENST00000562054 433 ntBASIC16.02■□□□□ 0.16
HNF4AP41235 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
HNF4AP41235 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 AC021097.1-201ENST00000607902 574 ntBASIC16.02■□□□□ 0.16
HNF4AP41235 AC004877.2-201ENST00000623941 599 ntBASIC16.02■□□□□ 0.16
HNF4AP41235 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.02■□□□□ 0.15
HNF4AP41235 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HNF4AP41235 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
HNF4AP41235 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
HNF4AP41235 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
HNF4AP41235 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HNF4AP41235 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.01■□□□□ 0.15
HNF4AP41235 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HNF4AP41235 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.01■□□□□ 0.15
HNF4AP41235 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HNF4AP41235 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.01■□□□□ 0.15
HNF4AP41235 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HNF4AP41235 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.01■□□□□ 0.15
HNF4AP41235 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.01■□□□□ 0.15
HNF4AP41235 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
HNF4AP41235 RNU1-129P-201ENST00000384064 167 ntBASIC16.01■□□□□ 0.15
HNF4AP41235 MIR574-201ENST00000385209 96 ntBASIC16.01■□□□□ 0.15
HNF4AP41235 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 HMGA1P7-201ENST00000406908 502 ntBASIC16.01■□□□□ 0.15
HNF4AP41235 PMS2P4-201ENST00000412466 1052 ntBASIC16.01■□□□□ 0.15
HNF4AP41235 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.01■□□□□ 0.15
HNF4AP41235 U1.21-201ENST00000580816 167 ntBASIC16.01■□□□□ 0.15
HNF4AP41235 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.01■□□□□ 0.15
HNF4AP41235 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.01■□□□□ 0.15
HNF4AP41235 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.01■□□□□ 0.15
HNF4AP41235 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 AC025580.3-201ENST00000617932 1424 ntBASIC16.01■□□□□ 0.15
HNF4AP41235 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HNF4AP41235 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.01■□□□□ 0.15
HNF4AP41235 AC005052.1-201ENST00000625181 2492 ntBASIC16.01■□□□□ 0.15
HNF4AP41235 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HNF4AP41235 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.01■□□□□ 0.15
HNF4AP41235 AC092364.2-201ENST00000596710 2692 ntBASIC16.01■□□□□ 0.15
HNF4AP41235 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HNF4AP41235 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16■□□□□ 0.15
HNF4AP41235 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16■□□□□ 0.15
HNF4AP41235 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16■□□□□ 0.15
HNF4AP41235 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16■□□□□ 0.15
HNF4AP41235 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16■□□□□ 0.15
HNF4AP41235 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HNF4AP41235 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16■□□□□ 0.15
HNF4AP41235 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 AC023274.1-201ENST00000418278 595 ntBASIC16■□□□□ 0.15
HNF4AP41235 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16■□□□□ 0.15
HNF4AP41235 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16■□□□□ 0.15
HNF4AP41235 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16■□□□□ 0.15
HNF4AP41235 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
HNF4AP41235 AC023141.13-201ENST00000604991 943 ntBASIC16■□□□□ 0.15
HNF4AP41235 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16■□□□□ 0.15
HNF4AP41235 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16■□□□□ 0.15
HNF4AP41235 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16■□□□□ 0.15
HNF4AP41235 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HNF4AP41235 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms