Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN4P29074 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.61■□□□□ 0.25
PTPN4P29074 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.61■□□□□ 0.25
PTPN4P29074 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.61■□□□□ 0.25
PTPN4P29074 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.61■□□□□ 0.25
PTPN4P29074 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN4P29074 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN4P29074 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PTPN4P29074 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 AC073592.4-201ENST00000623827 446 ntBASIC16.61■□□□□ 0.25
PTPN4P29074 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
PTPN4P29074 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN4P29074 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN4P29074 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.61■□□□□ 0.25
PTPN4P29074 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 FRMD8P1-201ENST00000440433 1524 ntBASIC16.6■□□□□ 0.25
PTPN4P29074 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PTPN4P29074 AL603832.2-201ENST00000566195 2125 ntBASIC16.6■□□□□ 0.25
PTPN4P29074 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN4P29074 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN4P29074 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
PTPN4P29074 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN4P29074 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
PTPN4P29074 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 COX5BP2-201ENST00000392354 334 ntBASIC16.6■□□□□ 0.25
PTPN4P29074 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN4P29074 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.6■□□□□ 0.25
PTPN4P29074 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN4P29074 PRYP5-201ENST00000451909 266 ntBASIC16.6■□□□□ 0.25
PTPN4P29074 PGAM5P1-201ENST00000518923 814 ntBASIC16.6■□□□□ 0.25
PTPN4P29074 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN4P29074 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN4P29074 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
PTPN4P29074 AL356488.2-201ENST00000602755 427 ntBASIC16.6■□□□□ 0.25
PTPN4P29074 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN4P29074 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PTPN4P29074 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
PTPN4P29074 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.6■□□□□ 0.25
PTPN4P29074 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN4P29074 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PTPN4P29074 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.6■□□□□ 0.25
PTPN4P29074 AP002414.3-201ENST00000589352 1468 ntBASIC16.6■□□□□ 0.25
PTPN4P29074 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.6■□□□□ 0.25
PTPN4P29074 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTPN4P29074 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 AC006058.4-201ENST00000624016 1670 ntBASIC16.59■□□□□ 0.25
PTPN4P29074 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.59■□□□□ 0.25
PTPN4P29074 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.59■□□□□ 0.25
PTPN4P29074 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
PTPN4P29074 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.59■□□□□ 0.25
PTPN4P29074 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PTPN4P29074 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.59■□□□□ 0.25
PTPN4P29074 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.59■□□□□ 0.25
PTPN4P29074 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.59■□□□□ 0.25
PTPN4P29074 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PTPN4P29074 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.59■□□□□ 0.25
PTPN4P29074 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.59■□□□□ 0.25
PTPN4P29074 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTPN4P29074 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
PTPN4P29074 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTPN4P29074 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTPN4P29074 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.58■□□□□ 0.25
PTPN4P29074 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.58■□□□□ 0.25
PTPN4P29074 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTPN4P29074 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.25
PTPN4P29074 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms