Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 AL391825.1-201ENST00000457671 1364 ntBASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 EGFEM1P-202ENST00000431685 1563 ntBASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 AC245100.3-201ENST00000441281 285 ntBASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 AC105021.1-202ENST00000570572 669 ntBASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMD1Q9UGP4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMD1Q9UGP4 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
LIMD1Q9UGP4 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 AL355312.1-201ENST00000407115 2176 ntBASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 DOC2GP-202ENST00000514950 1163 ntBASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 AL079307.3-201ENST00000556114 283 ntBASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms