Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 AL592309.1-201ENST00000443127 649 ntBASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 IGHV3-62-201ENST00000520057 340 ntBASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 HLA-A-202ENST00000376806 1854 ntBASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 AL031731.1-201ENST00000642131 2094 ntBASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTCHD1Q96NR3 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 NFIC-211ENST00000641145 8399 ntBASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 AC005237.2-201ENST00000434368 219 ntBASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PTCHD1Q96NR3 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTCHD1Q96NR3 PCDHB19P-201ENST00000570871 2371 ntBASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms