Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16■□□□□ 0.15
LMX1AQ8TE12 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AL589702.1-201ENST00000641229 1509 ntBASIC15.99■□□□□ 0.15
LMX1AQ8TE12 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AL603756.1-201ENST00000606511 2163 ntBASIC15.99■□□□□ 0.15
LMX1AQ8TE12 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AL844908.2-201ENST00000609461 460 ntBASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AC008738.7-201ENST00000609744 511 ntBASIC15.99■□□□□ 0.15
LMX1AQ8TE12 AL662799.1-202ENST00000614205 422 ntBASIC15.99■□□□□ 0.15
LMX1AQ8TE12 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1AQ8TE12 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 SPTLC1P1-201ENST00000447199 261 ntBASIC15.98■□□□□ 0.15
LMX1AQ8TE12 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 AC009407.1-201ENST00000568958 598 ntBASIC15.98■□□□□ 0.15
LMX1AQ8TE12 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1AQ8TE12 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms