Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.64□□□□□ -0.07
SKA3Q8IX90 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SKA3Q8IX90 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 RNU1-129P-201ENST00000384064 167 ntBASIC14.63□□□□□ -0.07
SKA3Q8IX90 AC023274.1-201ENST00000418278 595 ntBASIC14.63□□□□□ -0.07
SKA3Q8IX90 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.63□□□□□ -0.07
SKA3Q8IX90 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 U1.21-201ENST00000580816 167 ntBASIC14.63□□□□□ -0.07
SKA3Q8IX90 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 AC079328.2-201ENST00000561241 3354 ntBASIC14.63□□□□□ -0.07
SKA3Q8IX90 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 AC007326.2-201ENST00000624224 7579 ntBASIC14.63□□□□□ -0.07
SKA3Q8IX90 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.63□□□□□ -0.07
SKA3Q8IX90 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SKA3Q8IX90 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.62□□□□□ -0.07
SKA3Q8IX90 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.62□□□□□ -0.07
SKA3Q8IX90 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SKA3Q8IX90 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms