Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.56□□□□□ -0.24
CDX1P47902 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CDX1P47902 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.56□□□□□ -0.24
CDX1P47902 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CDX1P47902 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.56□□□□□ -0.24
CDX1P47902 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.56□□□□□ -0.24
CDX1P47902 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.56□□□□□ -0.24
CDX1P47902 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.56□□□□□ -0.24
CDX1P47902 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC13.56□□□□□ -0.24
CDX1P47902 AC116407.3-201ENST00000623905 1129 ntBASIC13.56□□□□□ -0.24
CDX1P47902 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
CDX1P47902 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CDX1P47902 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.56□□□□□ -0.24
CDX1P47902 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDX1P47902 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.55□□□□□ -0.24
CDX1P47902 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.55□□□□□ -0.24
CDX1P47902 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CDX1P47902 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.55□□□□□ -0.24
CDX1P47902 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CDX1P47902 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC13.55□□□□□ -0.24
CDX1P47902 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CDX1P47902 AC105339.3-201ENST00000560043 636 ntBASIC13.55□□□□□ -0.24
CDX1P47902 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC13.55□□□□□ -0.24
CDX1P47902 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC13.55□□□□□ -0.24
CDX1P47902 AC006557.2-201ENST00000592985 1240 ntBASIC13.55□□□□□ -0.24
CDX1P47902 COPE-211ENST00000600932 1144 ntTSL 5 BASIC13.55□□□□□ -0.24
CDX1P47902 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.55□□□□□ -0.24
CDX1P47902 MIR7706-201ENST00000613747 67 ntBASIC13.55□□□□□ -0.24
CDX1P47902 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.55□□□□□ -0.24
CDX1P47902 LINC01451-201ENST00000623792 534 ntBASIC13.55□□□□□ -0.24
CDX1P47902 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.55□□□□□ -0.24
CDX1P47902 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CDX1P47902 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
CDX1P47902 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CDX1P47902 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.55□□□□□ -0.24
CDX1P47902 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.55□□□□□ -0.24
CDX1P47902 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.55□□□□□ -0.24
CDX1P47902 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms