Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFC3P40938 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RFC3P40938 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
RFC3P40938 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RFC3P40938 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RFC3P40938 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
RFC3P40938 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.12■□□□□ 0.01
RFC3P40938 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.12■□□□□ 0.01
RFC3P40938 FAM8A3P-201ENST00000427218 844 ntBASIC15.12■□□□□ 0.01
RFC3P40938 SPDYE14P-201ENST00000442619 822 ntBASIC15.12■□□□□ 0.01
RFC3P40938 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.12■□□□□ 0.01
RFC3P40938 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.12■□□□□ 0.01
RFC3P40938 AC125807.1-201ENST00000483097 614 ntBASIC15.12■□□□□ 0.01
RFC3P40938 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
RFC3P40938 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.12■□□□□ 0.01
RFC3P40938 AC093214.1-201ENST00000511688 1107 ntBASIC15.12■□□□□ 0.01
RFC3P40938 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.12■□□□□ 0.01
RFC3P40938 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.12■□□□□ 0.01
RFC3P40938 KRT8P23-201ENST00000560090 1207 ntBASIC15.12■□□□□ 0.01
RFC3P40938 AP000842.3-202ENST00000569238 1080 ntBASIC15.12■□□□□ 0.01
RFC3P40938 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 MIR3909-201ENST00000579518 119 ntBASIC15.12■□□□□ 0.01
RFC3P40938 AL390955.2-201ENST00000603032 514 ntBASIC15.12■□□□□ 0.01
RFC3P40938 AC021097.1-201ENST00000607902 574 ntBASIC15.12■□□□□ 0.01
RFC3P40938 AP001059.3-201ENST00000619053 235 ntBASIC15.12■□□□□ 0.01
RFC3P40938 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
RFC3P40938 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
RFC3P40938 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.12■□□□□ 0.01
RFC3P40938 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RFC3P40938 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RFC3P40938 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RFC3P40938 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
RFC3P40938 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RFC3P40938 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.11■□□□□ 0.01
RFC3P40938 AC006277.1-201ENST00000624348 1610 ntBASIC15.11■□□□□ 0.01
RFC3P40938 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.11■□□□□ 0.01
RFC3P40938 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RFC3P40938 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.11■□□□□ 0.01
RFC3P40938 AC069262.1-201ENST00000539058 672 ntBASIC15.11■□□□□ 0.01
RFC3P40938 SPCS2P1-201ENST00000561636 679 ntBASIC15.11■□□□□ 0.01
RFC3P40938 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 AC092364.2-202ENST00000597012 1073 ntBASIC15.11■□□□□ 0.01
RFC3P40938 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RFC3P40938 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.11■□□□□ 0.01
RFC3P40938 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.11■□□□□ 0.01
RFC3P40938 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.11■□□□□ 0.01
RFC3P40938 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.11■□□□□ 0.01
RFC3P40938 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.11■□□□□ 0.01
RFC3P40938 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
RFC3P40938 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RFC3P40938 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.11■□□□□ 0.01
RFC3P40938 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RFC3P40938 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RFC3P40938 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.1■□□□□ 0.01
RFC3P40938 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.1■□□□□ 0.01
RFC3P40938 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 MIR943-201ENST00000401286 94 ntBASIC15.1■□□□□ 0.01
RFC3P40938 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms