Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.42■□□□□ 0.7
COL4A5P29400 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A5P29400 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC19.42■□□□□ 0.7
COL4A5P29400 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A5P29400 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.42■□□□□ 0.7
COL4A5P29400 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.42■□□□□ 0.7
COL4A5P29400 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A5P29400 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A5P29400 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A5P29400 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COL4A5P29400 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
COL4A5P29400 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A5P29400 KRT8P37-201ENST00000451609 1420 ntBASIC19.41■□□□□ 0.7
COL4A5P29400 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A5P29400 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
COL4A5P29400 PTP4A1P2-201ENST00000546033 454 ntBASIC19.41■□□□□ 0.7
COL4A5P29400 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.41■□□□□ 0.7
COL4A5P29400 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.41■□□□□ 0.7
COL4A5P29400 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.41■□□□□ 0.7
COL4A5P29400 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A5P29400 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC19.41■□□□□ 0.7
COL4A5P29400 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
COL4A5P29400 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.41■□□□□ 0.7
COL4A5P29400 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A5P29400 AC005622.1-201ENST00000636801 1703 ntBASIC19.4■□□□□ 0.7
COL4A5P29400 GGT3P-204ENST00000453783 1664 ntBASIC19.4■□□□□ 0.7
COL4A5P29400 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A5P29400 AC012441.1-201ENST00000446669 685 ntBASIC19.4■□□□□ 0.7
COL4A5P29400 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A5P29400 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A5P29400 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A5P29400 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A5P29400 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.4■□□□□ 0.7
COL4A5P29400 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.4■□□□□ 0.7
COL4A5P29400 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
COL4A5P29400 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 AL365330.1-201ENST00000607459 531 ntBASIC19.4■□□□□ 0.7
COL4A5P29400 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.4■□□□□ 0.7
COL4A5P29400 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19.4■□□□□ 0.7
COL4A5P29400 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL4A5P29400 SOCS2P1-201ENST00000417727 557 ntBASIC19.4■□□□□ 0.7
COL4A5P29400 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A5P29400 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A5P29400 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.4■□□□□ 0.7
COL4A5P29400 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.4■□□□□ 0.7
COL4A5P29400 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.4■□□□□ 0.7
COL4A5P29400 DUX4L45-201ENST00000566406 1057 ntBASIC19.4■□□□□ 0.7
COL4A5P29400 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC19.4■□□□□ 0.7
COL4A5P29400 AL021578.1-201ENST00000613646 709 ntBASIC19.4■□□□□ 0.7
COL4A5P29400 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.4■□□□□ 0.7
COL4A5P29400 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.39■□□□□ 0.7
COL4A5P29400 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.39■□□□□ 0.69
COL4A5P29400 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL4A5P29400 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.39■□□□□ 0.69
COL4A5P29400 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.39■□□□□ 0.69
COL4A5P29400 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.39■□□□□ 0.69
COL4A5P29400 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC19.39■□□□□ 0.69
COL4A5P29400 AP002490.2-201ENST00000524791 560 ntBASIC19.39■□□□□ 0.69
COL4A5P29400 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.39■□□□□ 0.69
COL4A5P29400 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.39■□□□□ 0.69
COL4A5P29400 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
COL4A5P29400 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL4A5P29400 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms