Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
COL8A1P27658 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.36□□□□□ -0.11
COL8A1P27658 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
COL8A1P27658 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
COL8A1P27658 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 AC114501.2-201ENST00000439631 535 ntBASIC14.36□□□□□ -0.11
COL8A1P27658 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 RNA5SP410-201ENST00000516285 106 ntBASIC14.36□□□□□ -0.11
COL8A1P27658 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.36□□□□□ -0.11
COL8A1P27658 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.36□□□□□ -0.11
COL8A1P27658 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.36□□□□□ -0.11
COL8A1P27658 AC243960.2-201ENST00000600996 747 ntBASIC14.36□□□□□ -0.11
COL8A1P27658 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.36□□□□□ -0.11
COL8A1P27658 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC14.36□□□□□ -0.11
COL8A1P27658 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
COL8A1P27658 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.36□□□□□ -0.11
COL8A1P27658 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL8A1P27658 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
COL8A1P27658 AC018665.1-201ENST00000622927 1362 ntBASIC14.35□□□□□ -0.11
COL8A1P27658 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.35□□□□□ -0.11
COL8A1P27658 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.35□□□□□ -0.11
COL8A1P27658 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL8A1P27658 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC14.35□□□□□ -0.11
COL8A1P27658 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.35□□□□□ -0.11
COL8A1P27658 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
COL8A1P27658 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
COL8A1P27658 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.35□□□□□ -0.11
COL8A1P27658 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
COL8A1P27658 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
COL8A1P27658 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
COL8A1P27658 AC099336.1-201ENST00000417053 1171 ntBASIC14.35□□□□□ -0.11
COL8A1P27658 KRT43P-201ENST00000434019 910 ntBASIC14.35□□□□□ -0.11
COL8A1P27658 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.35□□□□□ -0.11
COL8A1P27658 KLF2P4-201ENST00000451959 1225 ntBASIC14.35□□□□□ -0.11
COL8A1P27658 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 RNA5SP423-201ENST00000517127 109 ntBASIC14.35□□□□□ -0.11
COL8A1P27658 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC14.35□□□□□ -0.11
COL8A1P27658 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.35□□□□□ -0.11
COL8A1P27658 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.35□□□□□ -0.11
COL8A1P27658 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
COL8A1P27658 AC010319.3-201ENST00000597028 470 ntBASIC14.35□□□□□ -0.11
COL8A1P27658 MIR6727-201ENST00000620702 65 ntBASIC14.35□□□□□ -0.11
COL8A1P27658 AP001350.2-201ENST00000625104 1094 ntBASIC14.35□□□□□ -0.11
COL8A1P27658 AP001002.2-201ENST00000625137 386 ntBASIC14.35□□□□□ -0.11
COL8A1P27658 PPA1-206ENST00000625364 644 ntTSL 5 BASIC14.35□□□□□ -0.11
COL8A1P27658 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
COL8A1P27658 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL8A1P27658 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
COL8A1P27658 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL8A1P27658 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL8A1P27658 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
COL8A1P27658 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
COL8A1P27658 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
COL8A1P27658 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms