Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 PRR31-201ENST00000371629 978 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 HES2-202ENST00000377836 507 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 COX5BP2-201ENST00000392354 334 ntBASIC12.46□□□□□ -0.41
HLA-DQA1P01909 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 SEC1P-202ENST00000473944 940 ntBASIC12.46□□□□□ -0.41
HLA-DQA1P01909 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC12.46□□□□□ -0.41
HLA-DQA1P01909 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HLA-DQA1P01909 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 AC016027.1-202ENST00000607927 1699 ntBASIC12.45□□□□□ -0.42
HLA-DQA1P01909 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 PHB2-202ENST00000440277 996 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 CLN6-221ENST00000637494 765 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DQA1P01909 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms