Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 REEP1-202ENST00000453231 940 ntTSL 2 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 UPF3AP2-201ENST00000457924 1132 ntBASIC24.27■■□□□ 1.48
RAPGEF3O95398 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 CHMP4BP1-201ENST00000556017 588 ntBASIC24.27■■□□□ 1.48
RAPGEF3O95398 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 HARS-202ENST00000415192 1401 ntTSL 2 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 AL031731.1-201ENST00000642131 2094 ntBASIC24.26■■□□□ 1.47
RAPGEF3O95398 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC24.26■■□□□ 1.47
RAPGEF3O95398 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC24.26■■□□□ 1.47
RAPGEF3O95398 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC24.26■■□□□ 1.47
RAPGEF3O95398 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
RAPGEF3O95398 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 PKIG-203ENST00000372887 769 ntTSL 3 BASIC24.26■■□□□ 1.47
RAPGEF3O95398 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 AZGP1P1-201ENST00000411909 902 ntBASIC24.26■■□□□ 1.47
RAPGEF3O95398 Z93015.1-201ENST00000451718 390 ntBASIC24.26■■□□□ 1.47
RAPGEF3O95398 BX284668.4-201ENST00000453917 508 ntBASIC24.26■■□□□ 1.47
RAPGEF3O95398 LDHBP1-201ENST00000455730 1119 ntBASIC24.26■■□□□ 1.47
RAPGEF3O95398 MIR5572-201ENST00000583188 137 ntBASIC24.26■■□□□ 1.47
RAPGEF3O95398 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC24.26■■□□□ 1.47
RAPGEF3O95398 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC24.26■■□□□ 1.47
RAPGEF3O95398 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 GRN-222ENST00000639447 1314 ntTSL 2 BASIC24.26■■□□□ 1.47
RAPGEF3O95398 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC24.26■■□□□ 1.47
RAPGEF3O95398 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
RAPGEF3O95398 AC138028.6-201ENST00000616106 1482 ntBASIC24.26■■□□□ 1.47
RAPGEF3O95398 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 RPS3-201ENST00000278572 907 ntTSL 3 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 BTBD6P1-201ENST00000412176 1267 ntBASIC24.25■■□□□ 1.47
RAPGEF3O95398 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
RAPGEF3O95398 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RAPGEF3O95398 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC24.24■■□□□ 1.47
RAPGEF3O95398 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 RHBDF1P1-201ENST00000427504 1941 ntBASIC24.24■■□□□ 1.47
RAPGEF3O95398 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
RAPGEF3O95398 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 AL662890.1-201ENST00000396818 632 ntBASIC24.24■■□□□ 1.47
RAPGEF3O95398 AC253536.4-201ENST00000440539 267 ntBASIC24.24■■□□□ 1.47
RAPGEF3O95398 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC24.24■■□□□ 1.47
RAPGEF3O95398 VDAC1P7-201ENST00000462417 847 ntBASIC24.24■■□□□ 1.47
RAPGEF3O95398 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC24.24■■□□□ 1.47
RAPGEF3O95398 AP001063.1-201ENST00000568332 529 ntBASIC24.24■■□□□ 1.47
RAPGEF3O95398 AL139011.1-202ENST00000642063 584 ntBASIC24.24■■□□□ 1.47
RAPGEF3O95398 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC24.24■■□□□ 1.47
RAPGEF3O95398 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC24.24■■□□□ 1.47
RAPGEF3O95398 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RAPGEF3O95398 BX323043.1-201ENST00000641006 1765 ntBASIC24.24■■□□□ 1.47
RAPGEF3O95398 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms