Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.23■□□□□ 0.19
VPS4BO75351 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS4BO75351 NCF1C-201ENST00000438382 1427 ntBASIC16.23■□□□□ 0.19
VPS4BO75351 AC008741.2-201ENST00000612792 3115 ntBASIC16.23■□□□□ 0.19
VPS4BO75351 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
VPS4BO75351 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS4BO75351 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 CYMP-203ENST00000474680 1263 ntBASIC16.23■□□□□ 0.19
VPS4BO75351 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.23■□□□□ 0.19
VPS4BO75351 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.23■□□□□ 0.19
VPS4BO75351 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS4BO75351 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS4BO75351 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.23■□□□□ 0.19
VPS4BO75351 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VPS4BO75351 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.23■□□□□ 0.19
VPS4BO75351 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS4BO75351 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VPS4BO75351 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.23■□□□□ 0.19
VPS4BO75351 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS4BO75351 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS4BO75351 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VPS4BO75351 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VPS4BO75351 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS4BO75351 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VPS4BO75351 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
VPS4BO75351 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS4BO75351 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS4BO75351 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS4BO75351 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS4BO75351 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
VPS4BO75351 AC005829.1-201ENST00000570002 483 ntBASIC16.22■□□□□ 0.19
VPS4BO75351 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS4BO75351 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS4BO75351 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 MIR1199-201ENST00000621445 119 ntBASIC16.22■□□□□ 0.19
VPS4BO75351 AC107918.4-202ENST00000641623 219 ntBASIC16.22■□□□□ 0.19
VPS4BO75351 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
VPS4BO75351 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS4BO75351 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 AL596087.1-201ENST00000400979 1969 ntBASIC16.22■□□□□ 0.19
VPS4BO75351 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS4BO75351 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VPS4BO75351 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS4BO75351 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS4BO75351 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.21■□□□□ 0.19
VPS4BO75351 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
VPS4BO75351 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS4BO75351 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
VPS4BO75351 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS4BO75351 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
VPS4BO75351 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
VPS4BO75351 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS4BO75351 AC244107.1-201ENST00000442033 332 ntBASIC16.21■□□□□ 0.19
VPS4BO75351 RFPL4AP1-201ENST00000530883 850 ntBASIC16.21■□□□□ 0.19
VPS4BO75351 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms