Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 ID1-201ENST00000376105 1233 ntBASIC13.34□□□□□ -0.27
HMGB3O15347 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 PON3-205ENST00000451904 1053 ntTSL 3 BASIC13.34□□□□□ -0.27
HMGB3O15347 RPS20-210ENST00000523936 899 ntTSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 AC092666.2-201ENST00000613287 246 ntBASIC13.34□□□□□ -0.27
HMGB3O15347 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HMGB3O15347 CNTNAP2-201ENST00000361727 9896 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.34□□□□□ -0.27
HMGB3O15347 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HMGB3O15347 AL031595.1-201ENST00000623969 4709 ntBASIC13.34□□□□□ -0.27
HMGB3O15347 AL391807.1-203ENST00000604392 2365 ntBASIC13.34□□□□□ -0.27
HMGB3O15347 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HMGB3O15347 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HMGB3O15347 MAP1A-201ENST00000300231 10258 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.27
HMGB3O15347 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HMGB3O15347 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
HMGB3O15347 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.27
HMGB3O15347 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HMGB3O15347 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC13.33□□□□□ -0.27
HMGB3O15347 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HMGB3O15347 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.27
HMGB3O15347 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
HMGB3O15347 PBX1-203ENST00000420696 6636 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HMGB3O15347 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 AL596087.1-201ENST00000400979 1969 ntBASIC13.33□□□□□ -0.28
HMGB3O15347 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HMGB3O15347 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.33□□□□□ -0.28
HMGB3O15347 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.33□□□□□ -0.28
HMGB3O15347 TSPY14P-201ENST00000303979 915 ntBASIC13.33□□□□□ -0.28
HMGB3O15347 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
HMGB3O15347 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.33□□□□□ -0.28
HMGB3O15347 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC13.33□□□□□ -0.28
HMGB3O15347 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC13.33□□□□□ -0.28
HMGB3O15347 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 AC128688.1-201ENST00000487626 519 ntBASIC13.33□□□□□ -0.28
HMGB3O15347 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC13.33□□□□□ -0.28
HMGB3O15347 AP002490.2-201ENST00000524791 560 ntBASIC13.33□□□□□ -0.28
HMGB3O15347 AC142381.4-202ENST00000563973 229 ntBASIC13.33□□□□□ -0.28
HMGB3O15347 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 AL136038.4-201ENST00000603606 1261 ntBASIC13.33□□□□□ -0.28
HMGB3O15347 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC13.33□□□□□ -0.28
HMGB3O15347 AC079602.3-201ENST00000623931 403 ntBASIC13.33□□□□□ -0.28
HMGB3O15347 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC13.33□□□□□ -0.28
HMGB3O15347 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HMGB3O15347 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 GPR89P-201ENST00000407924 1495 ntBASIC13.33□□□□□ -0.28
HMGB3O15347 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.33□□□□□ -0.28
HMGB3O15347 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HMGB3O15347 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HMGB3O15347 SRGAP3-202ENST00000383836 8656 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HMGB3O15347 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HMGB3O15347 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms