Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 TREML5P-201ENST00000421694 576 ntBASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 AC069120.2-201ENST00000524091 540 ntBASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 AC007967.4-201ENST00000614700 386 ntBASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 FO538757.1-201ENST00000623083 1397 ntBASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 FAM8A3P-201ENST00000427218 844 ntBASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 AC093214.1-201ENST00000511688 1107 ntBASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLCF1Q9UBD9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.63□□□□□ -0.07
CLCF1Q9UBD9 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms