Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL20A1Q9P218 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.53■□□□□ 0.56
COL20A1Q9P218 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 AC015922.1-201ENST00000421102 1152 ntBASIC18.53■□□□□ 0.56
COL20A1Q9P218 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.53■□□□□ 0.56
COL20A1Q9P218 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.53■□□□□ 0.56
COL20A1Q9P218 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.53■□□□□ 0.56
COL20A1Q9P218 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.53■□□□□ 0.56
COL20A1Q9P218 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.53■□□□□ 0.56
COL20A1Q9P218 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.53■□□□□ 0.56
COL20A1Q9P218 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.53■□□□□ 0.56
COL20A1Q9P218 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL20A1Q9P218 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.52■□□□□ 0.56
COL20A1Q9P218 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.52■□□□□ 0.56
COL20A1Q9P218 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.52■□□□□ 0.56
COL20A1Q9P218 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.52■□□□□ 0.56
COL20A1Q9P218 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.52■□□□□ 0.56
COL20A1Q9P218 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.52■□□□□ 0.56
COL20A1Q9P218 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
COL20A1Q9P218 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL20A1Q9P218 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
COL20A1Q9P218 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
COL20A1Q9P218 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
COL20A1Q9P218 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.52■□□□□ 0.55
COL20A1Q9P218 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.52■□□□□ 0.55
COL20A1Q9P218 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL20A1Q9P218 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL20A1Q9P218 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL20A1Q9P218 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL20A1Q9P218 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.52■□□□□ 0.55
COL20A1Q9P218 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL20A1Q9P218 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL20A1Q9P218 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 SPTLC1P1-201ENST00000447199 261 ntBASIC18.51■□□□□ 0.55
COL20A1Q9P218 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 AC010336.2-201ENST00000564226 506 ntBASIC18.51■□□□□ 0.55
COL20A1Q9P218 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 AC004790.1-201ENST00000612686 536 ntBASIC18.51■□□□□ 0.55
COL20A1Q9P218 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL20A1Q9P218 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.51■□□□□ 0.55
COL20A1Q9P218 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 SPDYE17-201ENST00000412399 783 ntBASIC18.5■□□□□ 0.55
COL20A1Q9P218 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms