Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 AC020922.3-201ENST00000595064 547 ntBASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 AC132938.4-201ENST00000623835 848 ntBASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 AC020931.1-201ENST00000589622 1346 ntBASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 MRPL37P1-201ENST00000592451 1337 ntBASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL25A1Q9BXS0 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 AC007952.6-201ENST00000573168 2673 ntBASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 AC003957.1-201ENST00000625108 2673 ntBASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 AL023775.1-201ENST00000454907 1746 ntBASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 RPL13P2-201ENST00000440687 659 ntBASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 AC079112.1-201ENST00000454972 939 ntBASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 RNA5SP486-201ENST00000515961 83 ntBASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 PTPN20CP-201ENST00000614090 920 ntBASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL25A1Q9BXS0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.33■□□□□ 0.21
COL25A1Q9BXS0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL25A1Q9BXS0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL25A1Q9BXS0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 LINC01006-201ENST00000333319 2292 ntBASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 CNN2P10-201ENST00000443067 918 ntBASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 AC005740.2-201ENST00000511085 419 ntBASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 SAMD11P1-201ENST00000571429 661 ntBASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 REXO1L11P-201ENST00000620964 1927 ntBASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
COL25A1Q9BXS0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL25A1Q9BXS0 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL25A1Q9BXS0 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms