Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE1Q99829 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.54■□□□□ 0.24
CPNE1Q99829 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CPNE1Q99829 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.54■□□□□ 0.24
CPNE1Q99829 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
CPNE1Q99829 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.53■□□□□ 0.24
CPNE1Q99829 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.53■□□□□ 0.24
CPNE1Q99829 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.53■□□□□ 0.24
CPNE1Q99829 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CPNE1Q99829 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.53■□□□□ 0.24
CPNE1Q99829 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CPNE1Q99829 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CPNE1Q99829 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
CPNE1Q99829 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.53■□□□□ 0.24
CPNE1Q99829 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.53■□□□□ 0.24
CPNE1Q99829 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.53■□□□□ 0.24
CPNE1Q99829 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.53■□□□□ 0.24
CPNE1Q99829 IFNL4P1-201ENST00000607083 540 ntBASIC16.53■□□□□ 0.24
CPNE1Q99829 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.53■□□□□ 0.24
CPNE1Q99829 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.53■□□□□ 0.24
CPNE1Q99829 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.53■□□□□ 0.24
CPNE1Q99829 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CPNE1Q99829 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.53■□□□□ 0.24
CPNE1Q99829 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CPNE1Q99829 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPNE1Q99829 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.52■□□□□ 0.24
CPNE1Q99829 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CPNE1Q99829 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.52■□□□□ 0.24
CPNE1Q99829 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.52■□□□□ 0.24
CPNE1Q99829 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CPNE1Q99829 RNPS1P1-201ENST00000507437 918 ntBASIC16.52■□□□□ 0.24
CPNE1Q99829 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.52■□□□□ 0.24
CPNE1Q99829 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.52■□□□□ 0.24
CPNE1Q99829 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.52■□□□□ 0.24
CPNE1Q99829 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.52■□□□□ 0.24
CPNE1Q99829 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.52■□□□□ 0.24
CPNE1Q99829 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.52■□□□□ 0.24
CPNE1Q99829 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.52■□□□□ 0.24
CPNE1Q99829 AL356488.2-201ENST00000602755 427 ntBASIC16.52■□□□□ 0.24
CPNE1Q99829 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CPNE1Q99829 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CPNE1Q99829 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.52■□□□□ 0.24
CPNE1Q99829 CDC14C-201ENST00000428251 1719 ntBASIC16.52■□□□□ 0.24
CPNE1Q99829 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CPNE1Q99829 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPNE1Q99829 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPNE1Q99829 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPNE1Q99829 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPNE1Q99829 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.52■□□□□ 0.23
CPNE1Q99829 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CPNE1Q99829 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CPNE1Q99829 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.52■□□□□ 0.23
CPNE1Q99829 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.51■□□□□ 0.23
CPNE1Q99829 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.51■□□□□ 0.23
CPNE1Q99829 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.51■□□□□ 0.23
CPNE1Q99829 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.51■□□□□ 0.23
CPNE1Q99829 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CPNE1Q99829 MIR648-201ENST00000385046 94 ntBASIC16.51■□□□□ 0.23
CPNE1Q99829 MRPL20P1-201ENST00000400819 433 ntBASIC16.51■□□□□ 0.23
CPNE1Q99829 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.51■□□□□ 0.23
CPNE1Q99829 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.51■□□□□ 0.23
CPNE1Q99829 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms