Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 UXT-AS1-201ENST00000590504 1525 ntBASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 AC092364.2-201ENST00000596710 2692 ntBASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 AKAP8P1-201ENST00000434743 1349 ntBASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 AL158211.3-201ENST00000607385 239 ntBASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 AC025048.6-201ENST00000634326 1161 ntBASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 AL512652.2-201ENST00000625156 1716 ntBASIC18.86■□□□□ 0.61
SH3RF1Q7Z6J0 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 AC107918.2-201ENST00000530817 355 ntBASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 CR383656.12-201ENST00000549567 513 ntBASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 AL596325.1-201ENST00000563991 1082 ntBASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 AL359881.2-201ENST00000602973 570 ntBASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 BCL2-203ENST00000589955 5011 ntBASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SH3RF1Q7Z6J0 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 NME2P1-201ENST00000426182 414 ntBASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 AC092580.3-201ENST00000430932 139 ntBASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 IGHV3-62-201ENST00000520057 340 ntBASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 AL662799.1-202ENST00000614205 422 ntBASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 GGT3P-204ENST00000453783 1664 ntBASIC18.84■□□□□ 0.61
SH3RF1Q7Z6J0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms