Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 AC002056.1-201ENST00000395613 760 ntBASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 AC092474.2-201ENST00000424288 719 ntBASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 AC112191.1-201ENST00000523689 701 ntBASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SYNE3Q6ZMZ3 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 PGAM5P1-201ENST00000518923 814 ntBASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 AL161645.1-201ENST00000622716 1255 ntBASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SYNE3Q6ZMZ3 AC092919.2-201ENST00000623631 1645 ntBASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 PCGF3-213ENST00000620529 1899 ntBASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 AP002472.1-201ENST00000577490 586 ntBASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 AL671883.3-201ENST00000603274 991 ntBASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 ALOX12P2-203ENST00000570921 1945 ntBASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms