Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HOXD4P09016 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
HOXD4P09016 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.03■□□□□ -0
HOXD4P09016 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
HOXD4P09016 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
HOXD4P09016 FAM86GP-201ENST00000448322 971 ntBASIC15.03■□□□□ -0
HOXD4P09016 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.03■□□□□ -0
HOXD4P09016 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
HOXD4P09016 KRT8P48-201ENST00000515599 1220 ntBASIC15.03■□□□□ -0
HOXD4P09016 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.03■□□□□ -0
HOXD4P09016 AC109322.1-201ENST00000524499 1264 ntBASIC15.03■□□□□ -0
HOXD4P09016 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.03■□□□□ -0
HOXD4P09016 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
HOXD4P09016 AC243562.1-201ENST00000560672 389 ntBASIC15.03■□□□□ -0
HOXD4P09016 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.03■□□□□ -0
HOXD4P09016 AL135744.1-201ENST00000565098 629 ntBASIC15.03■□□□□ -0
HOXD4P09016 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.03■□□□□ -0
HOXD4P09016 AC239800.4-201ENST00000603712 296 ntBASIC15.03■□□□□ -0
HOXD4P09016 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.03■□□□□ -0
HOXD4P09016 AC132872.4-202ENST00000622924 2756 ntBASIC15.03■□□□□ -0
HOXD4P09016 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.03■□□□□ -0
HOXD4P09016 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.03■□□□□ -0
HOXD4P09016 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
HOXD4P09016 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HOXD4P09016 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.03■□□□□ -0
HOXD4P09016 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.02■□□□□ -0
HOXD4P09016 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.02■□□□□ -0
HOXD4P09016 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.02■□□□□ -0
HOXD4P09016 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
HOXD4P09016 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 WASH6P-202ENST00000359512 1437 ntBASIC15.02■□□□□ -0
HOXD4P09016 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.02■□□□□ -0
HOXD4P09016 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.02■□□□□ -0
HOXD4P09016 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.02■□□□□ -0
HOXD4P09016 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
HOXD4P09016 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.02■□□□□ -0
HOXD4P09016 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.02■□□□□ -0
HOXD4P09016 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
HOXD4P09016 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXD4P09016 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.02■□□□□ -0
HOXD4P09016 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.02□□□□□ -0.01
HOXD4P09016 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HOXD4P09016 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HOXD4P09016 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HOXD4P09016 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
HOXD4P09016 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.02□□□□□ -0.01
HOXD4P09016 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.02□□□□□ -0.01
HOXD4P09016 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
HOXD4P09016 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
HOXD4P09016 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.01□□□□□ -0.01
HOXD4P09016 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.01□□□□□ -0.01
HOXD4P09016 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
HOXD4P09016 AGGF1P2-201ENST00000426656 2106 ntBASIC15.01□□□□□ -0.01
HOXD4P09016 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.01□□□□□ -0.01
HOXD4P09016 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.01□□□□□ -0.01
HOXD4P09016 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.01□□□□□ -0.01
HOXD4P09016 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.01□□□□□ -0.01
HOXD4P09016 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.01□□□□□ -0.01
HOXD4P09016 KRT18P32-201ENST00000424695 1287 ntBASIC15.01□□□□□ -0.01
HOXD4P09016 CNN2P2-201ENST00000443536 909 ntBASIC15.01□□□□□ -0.01
HOXD4P09016 CNN2P3-201ENST00000450201 906 ntBASIC15.01□□□□□ -0.01
HOXD4P09016 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
HOXD4P09016 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.01□□□□□ -0.01
HOXD4P09016 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.01□□□□□ -0.01
HOXD4P09016 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
HOXD4P09016 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXD4P09016 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.01□□□□□ -0.01
HOXD4P09016 DUX4L17-201ENST00000557360 1267 ntBASIC15.01□□□□□ -0.01
HOXD4P09016 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.01□□□□□ -0.01
HOXD4P09016 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.01□□□□□ -0.01
HOXD4P09016 AL136317.3-201ENST00000618497 906 ntBASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms