Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A1P02462 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A1P02462 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A1P02462 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A1P02462 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
COL4A1P02462 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
COL4A1P02462 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A1P02462 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
COL4A1P02462 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A1P02462 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 CROCCP4-201ENST00000457096 498 ntBASIC19.87■□□□□ 0.77
COL4A1P02462 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A1P02462 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
COL4A1P02462 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.87■□□□□ 0.77
COL4A1P02462 AC093726.1-201ENST00000608064 963 ntBASIC19.87■□□□□ 0.77
COL4A1P02462 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
COL4A1P02462 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A1P02462 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
COL4A1P02462 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL4A1P02462 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A1P02462 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.86■□□□□ 0.77
COL4A1P02462 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL4A1P02462 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A1P02462 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL4A1P02462 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A1P02462 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A1P02462 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 AL162274.1-201ENST00000617191 1098 ntBASIC19.86■□□□□ 0.77
COL4A1P02462 AL033527.4-201ENST00000641026 673 ntBASIC19.86■□□□□ 0.77
COL4A1P02462 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 CLK3P2-201ENST00000427566 1453 ntBASIC19.86■□□□□ 0.77
COL4A1P02462 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL4A1P02462 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC19.86■□□□□ 0.77
COL4A1P02462 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
COL4A1P02462 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL4A1P02462 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.86■□□□□ 0.77
COL4A1P02462 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A1P02462 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
COL4A1P02462 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
COL4A1P02462 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.85■□□□□ 0.77
COL4A1P02462 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.85■□□□□ 0.77
COL4A1P02462 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.85■□□□□ 0.77
COL4A1P02462 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL4A1P02462 KRT17P8-201ENST00000540749 863 ntBASIC19.85■□□□□ 0.77
COL4A1P02462 SPIB-207ENST00000597855 564 ntTSL 4 BASIC19.85■□□□□ 0.77
COL4A1P02462 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC19.85■□□□□ 0.77
COL4A1P02462 AC017083.2-201ENST00000608069 979 ntBASIC19.85■□□□□ 0.77
COL4A1P02462 MIR6069-201ENST00000620069 79 ntBASIC19.85■□□□□ 0.77
COL4A1P02462 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL4A1P02462 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL4A1P02462 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 FLJ38576-201ENST00000623820 2459 ntBASIC19.85■□□□□ 0.77
COL4A1P02462 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
COL4A1P02462 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
COL4A1P02462 ALOX12P2-203ENST00000570921 1945 ntBASIC19.85■□□□□ 0.77
COL4A1P02462 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL4A1P02462 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.85■□□□□ 0.77
COL4A1P02462 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A1P02462 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 AC087499.6-201ENST00000411576 835 ntBASIC19.84■□□□□ 0.77
COL4A1P02462 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A1P02462 RHOA-206ENST00000454011 889 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A1P02462 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A1P02462 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A1P02462 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.84■□□□□ 0.77
COL4A1P02462 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A1P02462 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A1P02462 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 AL592424.1-201ENST00000563624 1536 ntBASIC19.84■□□□□ 0.77
COL4A1P02462 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms