Protein–RNA interactions for Protein: Q9Y3T6

R3HCC1, R3H and coiled-coil domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1Q9Y3T6 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
R3HCC1Q9Y3T6 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
R3HCC1Q9Y3T6 CICP4-201ENST00000447359 2812 ntBASIC19.04■□□□□ 0.64
R3HCC1Q9Y3T6 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
R3HCC1Q9Y3T6 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
R3HCC1Q9Y3T6 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
R3HCC1Q9Y3T6 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
R3HCC1Q9Y3T6 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 LINC02012-201ENST00000608206 1725 ntBASIC19.03■□□□□ 0.64
R3HCC1Q9Y3T6 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
R3HCC1Q9Y3T6 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
R3HCC1Q9Y3T6 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
R3HCC1Q9Y3T6 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
R3HCC1Q9Y3T6 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
R3HCC1Q9Y3T6 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19■□□□□ 0.63
R3HCC1Q9Y3T6 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms