Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 AL080243.2-201ENST00000418783 582 ntBASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 MTND6P24-201ENST00000440466 518 ntBASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 AC092364.2-201ENST00000596710 2692 ntBASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 MIR4321-201ENST00000592276 80 ntBASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 SPTSSB-204ENST00000617024 1292 ntBASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 AC073592.8-201ENST00000624126 511 ntBASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
KIAA1549Q9HCM3 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 IGHV3-42-201ENST00000520410 361 ntBASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 AL133215.2-201ENST00000609242 977 ntBASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 AC006449.6-201ENST00000612330 2296 ntBASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
KIAA1549Q9HCM3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 HLA-H-201ENST00000383620 1096 ntBASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 POU5F1P6-201ENST00000466990 990 ntBASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 AC018529.1-201ENST00000613063 361 ntBASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 AC008761.3-201ENST00000624803 892 ntBASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.6□□□□□ -0.07
KIAA1549Q9HCM3 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms