Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.1■□□□□ 0.33
PCDH9Q9HC56 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 SLC25A1P1-201ENST00000528351 927 ntBASIC17.1■□□□□ 0.33
PCDH9Q9HC56 AC034105.1-201ENST00000563488 319 ntBASIC17.1■□□□□ 0.33
PCDH9Q9HC56 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 AC129492.6-201ENST00000611383 1305 ntBASIC17.1■□□□□ 0.33
PCDH9Q9HC56 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PCDH9Q9HC56 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 CRYGEP-201ENST00000412192 528 ntBASIC17.09■□□□□ 0.33
PCDH9Q9HC56 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 VN2R19P-201ENST00000442399 1052 ntBASIC17.09■□□□□ 0.33
PCDH9Q9HC56 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 AC087641.1-201ENST00000557561 1021 ntBASIC17.09■□□□□ 0.33
PCDH9Q9HC56 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.09■□□□□ 0.33
PCDH9Q9HC56 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 AC132872.4-202ENST00000622924 2756 ntBASIC17.09■□□□□ 0.33
PCDH9Q9HC56 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH9Q9HC56 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
PCDH9Q9HC56 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms