Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC024909.3-201ENST00000611513 2257 ntBASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.82■□□□□ 0.28
SHROOM3Q8TF72 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHROOM3Q8TF72 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 AP000344.2-201ENST00000512987 629 ntBASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 AP002472.1-201ENST00000577490 586 ntBASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 C20orf181-201ENST00000623918 480 ntBASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 PCDHA1-201ENST00000378133 2726 ntBASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHROOM3Q8TF72 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 AC092474.2-201ENST00000424288 719 ntBASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 TIMM8BP1-201ENST00000452384 211 ntBASIC16.79■□□□□ 0.28
SHROOM3Q8TF72 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms