Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 AL135744.1-201ENST00000565098 629 ntBASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 HMGA1P7-201ENST00000406908 502 ntBASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 AC069335.1-201ENST00000489972 472 ntBASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 AC067863.1-201ENST00000494933 530 ntBASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 CFL1-212ENST00000531413 636 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 DUX4L17-201ENST00000557360 1267 ntBASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 RARRES2P8-201ENST00000566335 367 ntBASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC144BQ3MJ40 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 AC092474.2-201ENST00000424288 719 ntBASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 KRT18P32-201ENST00000424695 1287 ntBASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC144BQ3MJ40 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms