Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.32■□□□□ 0.04
RNF4P78317 AC027612.4-201ENST00000605371 583 ntBASIC15.32■□□□□ 0.04
RNF4P78317 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.32■□□□□ 0.04
RNF4P78317 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
RNF4P78317 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.32■□□□□ 0.04
RNF4P78317 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 AGGF1P2-201ENST00000426656 2106 ntBASIC15.32■□□□□ 0.04
RNF4P78317 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.32■□□□□ 0.04
RNF4P78317 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.32■□□□□ 0.04
RNF4P78317 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RNF4P78317 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RNF4P78317 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
RNF4P78317 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.32■□□□□ 0.04
RNF4P78317 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.31■□□□□ 0.04
RNF4P78317 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
RNF4P78317 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNF4P78317 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNF4P78317 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RNF4P78317 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.31■□□□□ 0.04
RNF4P78317 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.31■□□□□ 0.04
RNF4P78317 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.31■□□□□ 0.04
RNF4P78317 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
RNF4P78317 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
RNF4P78317 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.31■□□□□ 0.04
RNF4P78317 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.31■□□□□ 0.04
RNF4P78317 AC023141.5-201ENST00000458585 616 ntBASIC15.31■□□□□ 0.04
RNF4P78317 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.31■□□□□ 0.04
RNF4P78317 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.31■□□□□ 0.04
RNF4P78317 AC093520.2-201ENST00000561830 333 ntBASIC15.31■□□□□ 0.04
RNF4P78317 AL138918.1-201ENST00000568306 659 ntBASIC15.31■□□□□ 0.04
RNF4P78317 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.31■□□□□ 0.04
RNF4P78317 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.31■□□□□ 0.04
RNF4P78317 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.31■□□□□ 0.04
RNF4P78317 PCDHA12-202ENST00000613593 2588 ntBASIC15.31■□□□□ 0.04
RNF4P78317 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.31■□□□□ 0.04
RNF4P78317 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNF4P78317 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
RNF4P78317 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNF4P78317 UXT-AS1-201ENST00000590504 1525 ntBASIC15.31■□□□□ 0.04
RNF4P78317 AC008894.3-201ENST00000624324 3103 ntBASIC15.31■□□□□ 0.04
RNF4P78317 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.31■□□□□ 0.04
RNF4P78317 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNF4P78317 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.31■□□□□ 0.04
RNF4P78317 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.3■□□□□ 0.04
RNF4P78317 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.3■□□□□ 0.04
RNF4P78317 AC011676.5-201ENST00000624864 2660 ntBASIC15.3■□□□□ 0.04
RNF4P78317 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.3■□□□□ 0.04
RNF4P78317 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.3■□□□□ 0.04
RNF4P78317 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RNF4P78317 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.3■□□□□ 0.04
RNF4P78317 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.3■□□□□ 0.04
RNF4P78317 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.3■□□□□ 0.04
RNF4P78317 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.3■□□□□ 0.04
RNF4P78317 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.3■□□□□ 0.04
RNF4P78317 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.3■□□□□ 0.04
RNF4P78317 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.3■□□□□ 0.04
RNF4P78317 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.3■□□□□ 0.04
RNF4P78317 PRYP6-201ENST00000514804 343 ntBASIC15.3■□□□□ 0.04
RNF4P78317 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.3■□□□□ 0.04
RNF4P78317 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.3■□□□□ 0.04
RNF4P78317 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.3■□□□□ 0.04
RNF4P78317 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.3■□□□□ 0.04
RNF4P78317 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.3■□□□□ 0.04
RNF4P78317 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 AC046158.3-201ENST00000624947 2558 ntBASIC15.3■□□□□ 0.04
RNF4P78317 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNF4P78317 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.29■□□□□ 0.04
RNF4P78317 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.29■□□□□ 0.04
RNF4P78317 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
RNF4P78317 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.29■□□□□ 0.04
RNF4P78317 AC073439.1-201ENST00000624121 1774 ntBASIC15.29■□□□□ 0.04
RNF4P78317 GGT3P-204ENST00000453783 1664 ntBASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms