Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
VCPP55072 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.72■□□□□ 0.43
VCPP55072 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.72■□□□□ 0.43
VCPP55072 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
VCPP55072 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.72■□□□□ 0.43
VCPP55072 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.72■□□□□ 0.43
VCPP55072 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.72■□□□□ 0.43
VCPP55072 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.72■□□□□ 0.43
VCPP55072 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
VCPP55072 GGTLC5P-201ENST00000617623 998 ntBASIC17.72■□□□□ 0.43
VCPP55072 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.72■□□□□ 0.43
VCPP55072 AC092171.3-201ENST00000610122 2651 ntBASIC17.72■□□□□ 0.43
VCPP55072 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.72■□□□□ 0.43
VCPP55072 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.72■□□□□ 0.43
VCPP55072 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.72■□□□□ 0.43
VCPP55072 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCPP55072 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.72■□□□□ 0.43
VCPP55072 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.71■□□□□ 0.43
VCPP55072 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.71■□□□□ 0.43
VCPP55072 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.71■□□□□ 0.43
VCPP55072 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 AC107890.1-201ENST00000422478 521 ntBASIC17.71■□□□□ 0.43
VCPP55072 NME2P1-201ENST00000426182 414 ntBASIC17.71■□□□□ 0.43
VCPP55072 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 ATP5G2P4-201ENST00000442175 420 ntBASIC17.71■□□□□ 0.43
VCPP55072 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 CXCL1P1-201ENST00000502804 216 ntBASIC17.71■□□□□ 0.43
VCPP55072 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.71■□□□□ 0.43
VCPP55072 KRT8P48-201ENST00000515599 1220 ntBASIC17.71■□□□□ 0.43
VCPP55072 AC112191.1-201ENST00000523689 701 ntBASIC17.71■□□□□ 0.43
VCPP55072 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.71■□□□□ 0.43
VCPP55072 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
VCPP55072 AL358472.5-202ENST00000641448 1267 ntBASIC17.71■□□□□ 0.43
VCPP55072 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.71■□□□□ 0.43
VCPP55072 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
VCPP55072 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
VCPP55072 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCPP55072 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.71■□□□□ 0.43
VCPP55072 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.71■□□□□ 0.42
VCPP55072 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VCPP55072 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
VCPP55072 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
VCPP55072 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.71■□□□□ 0.42
VCPP55072 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.7■□□□□ 0.42
VCPP55072 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
VCPP55072 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
VCPP55072 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
VCPP55072 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
VCPP55072 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.7■□□□□ 0.42
VCPP55072 TREML5P-201ENST00000421694 576 ntBASIC17.7■□□□□ 0.42
VCPP55072 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCPP55072 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.7■□□□□ 0.42
VCPP55072 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.7■□□□□ 0.42
VCPP55072 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.7■□□□□ 0.42
VCPP55072 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.7■□□□□ 0.42
VCPP55072 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
VCPP55072 AL606495.2-201ENST00000605867 535 ntBASIC17.7■□□□□ 0.42
VCPP55072 AC026120.1-201ENST00000611536 926 ntBASIC17.7■□□□□ 0.42
VCPP55072 AC025048.6-201ENST00000634326 1161 ntBASIC17.7■□□□□ 0.42
VCPP55072 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms