Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HOXA1P49639 AC004817.3-201ENST00000602957 2129 ntBASIC13.81□□□□□ -0.2
HOXA1P49639 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXA1P49639 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HOXA1P49639 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 AC005521.1-201ENST00000393351 872 ntBASIC13.81□□□□□ -0.2
HOXA1P49639 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXA1P49639 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXA1P49639 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC13.81□□□□□ -0.2
HOXA1P49639 CLN6-204ENST00000564752 900 ntTSL 3 BASIC13.81□□□□□ -0.2
HOXA1P49639 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXA1P49639 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXA1P49639 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXA1P49639 CLN6-214ENST00000636314 442 ntTSL 3 BASIC13.81□□□□□ -0.2
HOXA1P49639 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXA1P49639 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXA1P49639 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXA1P49639 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
HOXA1P49639 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXA1P49639 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXA1P49639 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXA1P49639 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
HOXA1P49639 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
HOXA1P49639 STK19B-204ENST00000512515 211 ntBASIC13.8□□□□□ -0.2
HOXA1P49639 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 CD320-202ENST00000537716 1119 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXA1P49639 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC13.8□□□□□ -0.2
HOXA1P49639 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXA1P49639 AC011840.4-201ENST00000578471 627 ntBASIC13.8□□□□□ -0.2
HOXA1P49639 AL592071.1-201ENST00000611956 408 ntBASIC13.8□□□□□ -0.2
HOXA1P49639 AC124864.1-201ENST00000623408 392 ntBASIC13.8□□□□□ -0.2
HOXA1P49639 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
HOXA1P49639 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXA1P49639 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
HOXA1P49639 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXA1P49639 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 AC125634.1-201ENST00000438758 1403 ntBASIC13.8□□□□□ -0.2
HOXA1P49639 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXA1P49639 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXA1P49639 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXA1P49639 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.79□□□□□ -0.2
HOXA1P49639 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
HOXA1P49639 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXA1P49639 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
HOXA1P49639 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.79□□□□□ -0.2
HOXA1P49639 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXA1P49639 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
HOXA1P49639 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms