Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.41■□□□□ 0.38
BDNFP23560 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.41■□□□□ 0.38
BDNFP23560 AL136317.3-201ENST00000618497 906 ntBASIC17.41■□□□□ 0.38
BDNFP23560 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.41■□□□□ 0.38
BDNFP23560 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.41■□□□□ 0.38
BDNFP23560 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.41■□□□□ 0.38
BDNFP23560 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
BDNFP23560 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 AC092171.3-201ENST00000610122 2651 ntBASIC17.41■□□□□ 0.38
BDNFP23560 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BDNFP23560 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.41■□□□□ 0.38
BDNFP23560 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 AP3S2-216ENST00000617003 1561 ntBASIC17.4■□□□□ 0.38
BDNFP23560 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.4■□□□□ 0.38
BDNFP23560 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.4■□□□□ 0.38
BDNFP23560 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 FLJ38576-201ENST00000623820 2459 ntBASIC17.4■□□□□ 0.38
BDNFP23560 AD000864.1-201ENST00000624076 2295 ntBASIC17.4■□□□□ 0.38
BDNFP23560 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
BDNFP23560 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.4■□□□□ 0.38
BDNFP23560 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
BDNFP23560 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.4■□□□□ 0.38
BDNFP23560 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.4■□□□□ 0.38
BDNFP23560 AC015911.4-201ENST00000588022 1070 ntBASIC17.4■□□□□ 0.38
BDNFP23560 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 SPTSSB-204ENST00000617024 1292 ntBASIC17.4■□□□□ 0.38
BDNFP23560 MIR6080-201ENST00000617359 66 ntBASIC17.4■□□□□ 0.38
BDNFP23560 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
BDNFP23560 TUBB3P1-201ENST00000405796 1332 ntBASIC17.4■□□□□ 0.38
BDNFP23560 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
BDNFP23560 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
BDNFP23560 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BDNFP23560 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.39■□□□□ 0.38
BDNFP23560 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
BDNFP23560 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.39■□□□□ 0.37
BDNFP23560 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
BDNFP23560 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
BDNFP23560 AC011676.5-201ENST00000624864 2660 ntBASIC17.39■□□□□ 0.37
BDNFP23560 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BDNFP23560 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
BDNFP23560 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
BDNFP23560 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.39■□□□□ 0.37
BDNFP23560 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BDNFP23560 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.39■□□□□ 0.37
BDNFP23560 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
BDNFP23560 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.39■□□□□ 0.37
BDNFP23560 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.39■□□□□ 0.37
BDNFP23560 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.39■□□□□ 0.37
BDNFP23560 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
BDNFP23560 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
BDNFP23560 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BDNFP23560 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.39■□□□□ 0.37
BDNFP23560 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.39■□□□□ 0.37
BDNFP23560 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BDNFP23560 PCGF3-213ENST00000620529 1899 ntBASIC17.39■□□□□ 0.37
BDNFP23560 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BDNFP23560 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BDNFP23560 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BDNFP23560 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
BDNFP23560 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.38■□□□□ 0.37
BDNFP23560 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
BDNFP23560 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
BDNFP23560 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms