Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
VIMP08670 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.7■□□□□ 0.26
VIMP08670 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.7■□□□□ 0.26
VIMP08670 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 AC112504.1-201ENST00000623415 1841 ntBASIC16.7■□□□□ 0.26
VIMP08670 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
VIMP08670 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VIMP08670 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.7■□□□□ 0.26
VIMP08670 AC097637.2-201ENST00000624096 1997 ntBASIC16.69■□□□□ 0.26
VIMP08670 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VIMP08670 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.69■□□□□ 0.26
VIMP08670 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.69■□□□□ 0.26
VIMP08670 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.69■□□□□ 0.26
VIMP08670 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.69■□□□□ 0.26
VIMP08670 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
VIMP08670 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.69■□□□□ 0.26
VIMP08670 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
VIMP08670 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.69■□□□□ 0.26
VIMP08670 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VIMP08670 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.69■□□□□ 0.26
VIMP08670 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.69■□□□□ 0.26
VIMP08670 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.69■□□□□ 0.26
VIMP08670 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.69■□□□□ 0.26
VIMP08670 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.69■□□□□ 0.26
VIMP08670 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.69■□□□□ 0.26
VIMP08670 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.69■□□□□ 0.26
VIMP08670 FAM87A-204ENST00000613235 858 ntBASIC16.69■□□□□ 0.26
VIMP08670 TMEM191A-211ENST00000637163 1067 ntBASIC16.69■□□□□ 0.26
VIMP08670 AL139011.1-202ENST00000642063 584 ntBASIC16.69■□□□□ 0.26
VIMP08670 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.69■□□□□ 0.26
VIMP08670 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VIMP08670 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.69■□□□□ 0.26
VIMP08670 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VIMP08670 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VIMP08670 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.68■□□□□ 0.26
VIMP08670 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.68■□□□□ 0.26
VIMP08670 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VIMP08670 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VIMP08670 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
VIMP08670 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.68■□□□□ 0.26
VIMP08670 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.68■□□□□ 0.26
VIMP08670 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VIMP08670 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.68■□□□□ 0.26
VIMP08670 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.68■□□□□ 0.26
VIMP08670 Z99916.2-201ENST00000604037 246 ntBASIC16.68■□□□□ 0.26
VIMP08670 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.68■□□□□ 0.26
VIMP08670 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.68■□□□□ 0.26
VIMP08670 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VIMP08670 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VIMP08670 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VIMP08670 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.67■□□□□ 0.26
VIMP08670 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VIMP08670 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.67■□□□□ 0.26
VIMP08670 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.67■□□□□ 0.26
VIMP08670 AC006277.1-201ENST00000624348 1610 ntBASIC16.67■□□□□ 0.26
VIMP08670 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.67■□□□□ 0.26
VIMP08670 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms