Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL049840.3-201ENST00000602669 611 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 GGTLC5P-201ENST00000617623 998 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 AF228730.7-201ENST00000641842 219 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 KRT8P39-201ENST00000396270 1433 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 PI4KAP1-204ENST00000612579 1703 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 AL671710.1-201ENST00000610245 2349 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 AC008741.2-201ENST00000612792 3115 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 SLC4A1APP2-201ENST00000424054 1259 ntBASIC13.43□□□□□ -0.26
FOXA2Q9Y261 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 RNA5SP419-201ENST00000515908 135 ntBASIC13.43□□□□□ -0.26
FOXA2Q9Y261 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 AC116407.3-201ENST00000623905 1129 ntBASIC13.43□□□□□ -0.26
FOXA2Q9Y261 AL512652.2-201ENST00000625156 1716 ntBASIC13.43□□□□□ -0.26
FOXA2Q9Y261 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 AL596087.1-201ENST00000400979 1969 ntBASIC13.43□□□□□ -0.26
FOXA2Q9Y261 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA2Q9Y261 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 GGT4P-201ENST00000623672 1708 ntBASIC13.42□□□□□ -0.26
FOXA2Q9Y261 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 CENPM-204ENST00000402420 688 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 AC098831.1-202ENST00000438821 336 ntBASIC13.42□□□□□ -0.26
FOXA2Q9Y261 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 AC087163.2-201ENST00000457299 853 ntBASIC13.42□□□□□ -0.26
FOXA2Q9Y261 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 AC008667.4-201ENST00000607370 168 ntBASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms