Protein–RNA interactions for Protein: Q9UHP3

USP25, Ubiquitin carboxyl-terminal hydrolase 25, humanhuman

Predictions only

Length 1,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP25Q9UHP3 TOP3BP1-201ENST00000420768 1380 ntBASIC19.04■□□□□ 0.64
USP25Q9UHP3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
USP25Q9UHP3 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
USP25Q9UHP3 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP25Q9UHP3 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 AL603832.2-201ENST00000566195 2125 ntBASIC19.03■□□□□ 0.64
USP25Q9UHP3 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 AL596087.1-201ENST00000400979 1969 ntBASIC19.03■□□□□ 0.64
USP25Q9UHP3 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 HCG4P8-203ENST00000443049 980 ntBASIC19.03■□□□□ 0.64
USP25Q9UHP3 FGFR3P6-201ENST00000457012 610 ntBASIC19.03■□□□□ 0.64
USP25Q9UHP3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 NID2-208ENST00000617139 3827 ntTSL 5 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP25Q9UHP3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.03■□□□□ 0.64
USP25Q9UHP3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 SCARNA2-201ENST00000458748 420 ntBASIC19.02■□□□□ 0.64
USP25Q9UHP3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 AC008608.2-201ENST00000606089 416 ntBASIC19.02■□□□□ 0.64
USP25Q9UHP3 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
USP25Q9UHP3 AC004706.3-202ENST00000621574 984 ntBASIC19.02■□□□□ 0.64
USP25Q9UHP3 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP25Q9UHP3 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.02■□□□□ 0.63
USP25Q9UHP3 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
USP25Q9UHP3 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP25Q9UHP3 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP25Q9UHP3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
USP25Q9UHP3 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP25Q9UHP3 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP25Q9UHP3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USP25Q9UHP3 AC073347.1-201ENST00000421633 2643 ntBASIC19.02■□□□□ 0.63
USP25Q9UHP3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP25Q9UHP3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP25Q9UHP3 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
USP25Q9UHP3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP25Q9UHP3 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
USP25Q9UHP3 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC19.01■□□□□ 0.63
USP25Q9UHP3 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC19.01■□□□□ 0.63
USP25Q9UHP3 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP25Q9UHP3 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.01■□□□□ 0.63
USP25Q9UHP3 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP25Q9UHP3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.01■□□□□ 0.63
USP25Q9UHP3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP25Q9UHP3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP25Q9UHP3 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
USP25Q9UHP3 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms