Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LHX3Q9UBR4 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 AL589702.1-201ENST00000641229 1509 ntBASIC16.62■□□□□ 0.25
LHX3Q9UBR4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 AC098859.1-201ENST00000502915 1238 ntBASIC16.62■□□□□ 0.25
LHX3Q9UBR4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 LINC00628-201ENST00000628516 1289 ntBASIC16.62■□□□□ 0.25
LHX3Q9UBR4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.62■□□□□ 0.25
LHX3Q9UBR4 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 AC026150.2-201ENST00000564693 1156 ntBASIC16.61■□□□□ 0.25
LHX3Q9UBR4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 AC093028.1-201ENST00000622998 982 ntBASIC16.61■□□□□ 0.25
LHX3Q9UBR4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LHX3Q9UBR4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 AP3S2-216ENST00000617003 1561 ntBASIC16.6■□□□□ 0.25
LHX3Q9UBR4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 FAM220BP-201ENST00000377689 816 ntBASIC16.6■□□□□ 0.25
LHX3Q9UBR4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LHX3Q9UBR4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms