Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 AGGF1P2-201ENST00000426656 2106 ntBASIC17.74■□□□□ 0.43
CNTN3Q9P232 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 AC107890.1-201ENST00000422478 521 ntBASIC17.74■□□□□ 0.43
CNTN3Q9P232 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 AC140878.1-201ENST00000565277 250 ntBASIC17.74■□□□□ 0.43
CNTN3Q9P232 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 AC005498.2-205ENST00000593218 784 ntBASIC17.74■□□□□ 0.43
CNTN3Q9P232 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 LINC01144-201ENST00000626198 1710 ntBASIC17.74■□□□□ 0.43
CNTN3Q9P232 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CNTN3Q9P232 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CNTN3Q9P232 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 AL589702.1-201ENST00000641229 1509 ntBASIC17.73■□□□□ 0.43
CNTN3Q9P232 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 AC007967.4-201ENST00000614700 386 ntBASIC17.73■□□□□ 0.43
CNTN3Q9P232 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.73■□□□□ 0.43
CNTN3Q9P232 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CNTN3Q9P232 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.72■□□□□ 0.43
CNTN3Q9P232 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CNTN3Q9P232 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.72■□□□□ 0.43
CNTN3Q9P232 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms