Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AL133267.1-201ENST00000398220 340 ntBASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 RBM8B-201ENST00000555532 525 ntBASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 C2orf69P1-201ENST00000563532 1093 ntBASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 AL353770.1-201ENST00000614915 403 ntBASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 AC100757.4-201ENST00000626934 759 ntBASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.41■□□□□ 0.22
COL25A1Q9BXS0 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 RPL7P35-201ENST00000446943 740 ntBASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 MIR6842-201ENST00000612539 65 ntBASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 MIR6816-201ENST00000620368 66 ntBASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL25A1Q9BXS0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
COL25A1Q9BXS0 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 VDAC1P7-201ENST00000462417 847 ntBASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 AC012044.1-201ENST00000603431 297 ntBASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL25A1Q9BXS0 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 SNX15-201ENST00000352068 771 ntTSL 5 BASIC16.38■□□□□ 0.21
COL25A1Q9BXS0 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms