Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SPDYE11-202ENST00000450699 704 ntBASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 SNHG9-202ENST00000564014 471 ntBASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 SPDYE9P-201ENST00000570642 692 ntBASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 AL596442.2-201ENST00000610240 980 ntBASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 AC026120.1-201ENST00000611536 926 ntBASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 SPDYE10P-202ENST00000612005 668 ntBASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 SPDYE8P-202ENST00000612377 668 ntBASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 WASH6P-202ENST00000359512 1437 ntBASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 DNAJB3-202ENST00000449667 1266 ntBASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 TIMM8BP1-201ENST00000452384 211 ntBASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
PTCHD1Q96NR3 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 AC254562.1-201ENST00000417586 456 ntBASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 AP006288.1-201ENST00000446065 395 ntBASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.61■□□□□ 0.09
PTCHD1Q96NR3 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms