Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 EMBP1-201ENST00000458200 901 ntBASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 MIR5100-201ENST00000579544 119 ntBASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 AP005901.3-202ENST00000581653 237 ntBASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
DEPDC4Q8N2C3 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 AC064862.7-201ENST00000604520 867 ntBASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 AC114341.1-201ENST00000618070 349 ntBASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
DEPDC4Q8N2C3 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 AC009336.1-201ENST00000608941 1553 ntBASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 AC104640.1-201ENST00000562617 2109 ntBASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 SAPCD2P3-201ENST00000455031 850 ntBASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 STK19B-204ENST00000512515 211 ntBASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
DEPDC4Q8N2C3 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms