Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC50Q8IVM0 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCDC50Q8IVM0 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC50Q8IVM0 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC50Q8IVM0 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC50Q8IVM0 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC50Q8IVM0 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 FGFR3P6-201ENST00000457012 610 ntBASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 AC013467.2-201ENST00000605472 835 ntBASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC50Q8IVM0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 PI4KAP1-204ENST00000612579 1703 ntBASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 NORAD-201ENST00000565493 5339 ntBASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 SCARNA2-201ENST00000458748 420 ntBASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC50Q8IVM0 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC50Q8IVM0 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms