Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 AC097637.2-201ENST00000624096 1997 ntBASIC10.3□□□□□ -0.76
LINC00643Q86TS7 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 AC135279.3-201ENST00000610945 1311 ntBASIC10.3□□□□□ -0.76
LINC00643Q86TS7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
LINC00643Q86TS7 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 HSPA7-201ENST00000445535 1927 ntBASIC10.29□□□□□ -0.76
LINC00643Q86TS7 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 MIR572-201ENST00000384983 95 ntBASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 AL390719.1-204ENST00000412397 1219 ntBASIC10.29□□□□□ -0.76
LINC00643Q86TS7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PRSS44-201ENST00000515154 1146 ntBASIC10.29□□□□□ -0.76
LINC00643Q86TS7 AC016405.3-201ENST00000607710 860 ntBASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 AC008677.1-201ENST00000519230 1561 ntBASIC10.29□□□□□ -0.76
LINC00643Q86TS7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 API5-202ENST00000420461 2009 ntTSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TUBB8P12-201ENST00000308911 1335 ntBASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TUBB7P-202ENST00000428444 1305 ntBASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TUBB8P7-204ENST00000567960 1332 ntBASIC10.29□□□□□ -0.76
LINC00643Q86TS7 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
LINC00643Q86TS7 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
LINC00643Q86TS7 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms