Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA4P78363 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 AC016396.2-201ENST00000562575 1417 ntBASIC14.22□□□□□ -0.13
ABCA4P78363 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA4P78363 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA4P78363 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.22□□□□□ -0.13
ABCA4P78363 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.22□□□□□ -0.13
ABCA4P78363 AC104794.3-201ENST00000566840 1248 ntBASIC14.22□□□□□ -0.13
ABCA4P78363 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
ABCA4P78363 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.22□□□□□ -0.13
ABCA4P78363 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.22□□□□□ -0.13
ABCA4P78363 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 AC092053.1-201ENST00000605787 1936 ntBASIC14.22□□□□□ -0.13
ABCA4P78363 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.22□□□□□ -0.13
ABCA4P78363 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA4P78363 KRT8P49-201ENST00000604166 1432 ntBASIC14.22□□□□□ -0.13
ABCA4P78363 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
ABCA4P78363 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
ABCA4P78363 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.13
ABCA4P78363 SLC7A15P-201ENST00000424028 1363 ntBASIC14.21□□□□□ -0.13
ABCA4P78363 DFFBP1-201ENST00000433250 979 ntBASIC14.21□□□□□ -0.13
ABCA4P78363 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC14.21□□□□□ -0.13
ABCA4P78363 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC14.21□□□□□ -0.13
ABCA4P78363 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.21□□□□□ -0.13
ABCA4P78363 CHCHD2P3-201ENST00000603038 451 ntBASIC14.21□□□□□ -0.13
ABCA4P78363 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.21□□□□□ -0.13
ABCA4P78363 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
ABCA4P78363 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
ABCA4P78363 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
ABCA4P78363 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.21□□□□□ -0.13
ABCA4P78363 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.21□□□□□ -0.13
ABCA4P78363 EML3-217ENST00000531557 2509 ntTSL 5 BASIC14.21□□□□□ -0.13
ABCA4P78363 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA4P78363 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
ABCA4P78363 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
ABCA4P78363 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.21□□□□□ -0.14
ABCA4P78363 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.21□□□□□ -0.14
ABCA4P78363 AL033527.4-201ENST00000641026 673 ntBASIC14.21□□□□□ -0.14
ABCA4P78363 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ABCA4P78363 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
ABCA4P78363 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
ABCA4P78363 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
ABCA4P78363 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.2□□□□□ -0.14
ABCA4P78363 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
ABCA4P78363 NOC2LP1-202ENST00000452600 2235 ntBASIC14.2□□□□□ -0.14
ABCA4P78363 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
ABCA4P78363 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC14.2□□□□□ -0.14
ABCA4P78363 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.2□□□□□ -0.14
ABCA4P78363 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
ABCA4P78363 AL512384.1-201ENST00000406683 331 ntBASIC14.2□□□□□ -0.14
ABCA4P78363 AP006294.1-201ENST00000415407 339 ntBASIC14.2□□□□□ -0.14
ABCA4P78363 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.2□□□□□ -0.14
ABCA4P78363 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
ABCA4P78363 EML3-212ENST00000494176 2901 ntTSL 2 BASIC14.2□□□□□ -0.14
ABCA4P78363 EML3-216ENST00000529309 2909 ntTSL 2 BASIC14.2□□□□□ -0.14
ABCA4P78363 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.2□□□□□ -0.14
ABCA4P78363 AC068880.1-201ENST00000507289 2297 ntBASIC14.2□□□□□ -0.14
ABCA4P78363 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC14.2□□□□□ -0.14
ABCA4P78363 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA4P78363 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms