Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC092364.2-201ENST00000596710 2692 ntBASIC17.32■□□□□ 0.36
HDAC4P56524 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 MIR940-201ENST00000401276 94 ntBASIC17.32■□□□□ 0.36
HDAC4P56524 PMS2P4-201ENST00000412466 1052 ntBASIC17.32■□□□□ 0.36
HDAC4P56524 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.32■□□□□ 0.36
HDAC4P56524 AC140658.5-201ENST00000438532 169 ntBASIC17.32■□□□□ 0.36
HDAC4P56524 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.32■□□□□ 0.36
HDAC4P56524 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 PGAM5P1-201ENST00000518923 814 ntBASIC17.32■□□□□ 0.36
HDAC4P56524 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
HDAC4P56524 AL009183.1-201ENST00000603760 355 ntBASIC17.32■□□□□ 0.36
HDAC4P56524 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.32■□□□□ 0.36
HDAC4P56524 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.32■□□□□ 0.36
HDAC4P56524 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HDAC4P56524 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.32■□□□□ 0.36
HDAC4P56524 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC4P56524 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HDAC4P56524 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 PCDH8P1-201ENST00000428983 2773 ntBASIC17.31■□□□□ 0.36
HDAC4P56524 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.31■□□□□ 0.36
HDAC4P56524 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
HDAC4P56524 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.31■□□□□ 0.36
HDAC4P56524 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
HDAC4P56524 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.31■□□□□ 0.36
HDAC4P56524 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.31■□□□□ 0.36
HDAC4P56524 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.31■□□□□ 0.36
HDAC4P56524 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.31■□□□□ 0.36
HDAC4P56524 POLD2P1-201ENST00000511220 997 ntBASIC17.31■□□□□ 0.36
HDAC4P56524 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.31■□□□□ 0.36
HDAC4P56524 KRT18P58-201ENST00000527480 1120 ntBASIC17.31■□□□□ 0.36
HDAC4P56524 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 AC109635.5-201ENST00000533593 962 ntBASIC17.31■□□□□ 0.36
HDAC4P56524 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.31■□□□□ 0.36
HDAC4P56524 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 AC006449.5-201ENST00000610658 2098 ntBASIC17.31■□□□□ 0.36
HDAC4P56524 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.31■□□□□ 0.36
HDAC4P56524 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HDAC4P56524 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.31■□□□□ 0.36
HDAC4P56524 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC4P56524 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HDAC4P56524 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HDAC4P56524 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.3■□□□□ 0.36
HDAC4P56524 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.3■□□□□ 0.36
HDAC4P56524 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.3■□□□□ 0.36
HDAC4P56524 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.3■□□□□ 0.36
HDAC4P56524 AC074386.1-202ENST00000463561 864 ntBASIC17.3■□□□□ 0.36
HDAC4P56524 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.3■□□□□ 0.36
HDAC4P56524 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.3■□□□□ 0.36
HDAC4P56524 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.3■□□□□ 0.36
HDAC4P56524 AC021097.1-201ENST00000607902 574 ntBASIC17.3■□□□□ 0.36
HDAC4P56524 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.3■□□□□ 0.36
HDAC4P56524 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.3■□□□□ 0.36
HDAC4P56524 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 PCGF3-213ENST00000620529 1899 ntBASIC17.3■□□□□ 0.36
HDAC4P56524 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC4P56524 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HDAC4P56524 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HDAC4P56524 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HDAC4P56524 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms