Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.31■□□□□ 0.2
PKNOX1P55347 SNX33P1-201ENST00000592116 1762 ntBASIC16.31■□□□□ 0.2
PKNOX1P55347 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.31■□□□□ 0.2
PKNOX1P55347 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PKNOX1P55347 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PKNOX1P55347 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.3■□□□□ 0.2
PKNOX1P55347 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.3■□□□□ 0.2
PKNOX1P55347 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.3■□□□□ 0.2
PKNOX1P55347 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 MST1L-201ENST00000442552 2185 ntBASIC16.3■□□□□ 0.2
PKNOX1P55347 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.3■□□□□ 0.2
PKNOX1P55347 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PKNOX1P55347 AP002414.2-201ENST00000591780 3365 ntBASIC16.3■□□□□ 0.2
PKNOX1P55347 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.3■□□□□ 0.2
PKNOX1P55347 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.3■□□□□ 0.2
PKNOX1P55347 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PKNOX1P55347 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.3■□□□□ 0.2
PKNOX1P55347 AC008608.2-201ENST00000606089 416 ntBASIC16.3■□□□□ 0.2
PKNOX1P55347 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.3■□□□□ 0.2
PKNOX1P55347 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 REXO1L3P-201ENST00000622202 1288 ntBASIC16.3■□□□□ 0.2
PKNOX1P55347 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.3■□□□□ 0.2
PKNOX1P55347 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
PKNOX1P55347 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PKNOX1P55347 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.3■□□□□ 0.2
PKNOX1P55347 AC092384.3-202ENST00000564646 2873 ntBASIC16.3■□□□□ 0.2
PKNOX1P55347 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PKNOX1P55347 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.3■□□□□ 0.2
PKNOX1P55347 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.3■□□□□ 0.2
PKNOX1P55347 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PKNOX1P55347 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.29■□□□□ 0.2
PKNOX1P55347 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 AC002310.6-201ENST00000624451 1377 ntBASIC16.29■□□□□ 0.2
PKNOX1P55347 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.29■□□□□ 0.2
PKNOX1P55347 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PKNOX1P55347 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.29■□□□□ 0.2
PKNOX1P55347 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.29■□□□□ 0.2
PKNOX1P55347 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PKNOX1P55347 TSPY19P-201ENST00000418461 509 ntBASIC16.29■□□□□ 0.2
PKNOX1P55347 UPK3BP1-201ENST00000428678 509 ntBASIC16.29■□□□□ 0.2
PKNOX1P55347 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
PKNOX1P55347 TSPY18P-201ENST00000441642 509 ntBASIC16.29■□□□□ 0.2
PKNOX1P55347 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.29■□□□□ 0.2
PKNOX1P55347 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.29■□□□□ 0.2
PKNOX1P55347 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.29■□□□□ 0.2
PKNOX1P55347 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.29■□□□□ 0.2
PKNOX1P55347 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PKNOX1P55347 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PKNOX1P55347 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PKNOX1P55347 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PKNOX1P55347 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PKNOX1P55347 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PKNOX1P55347 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 KRT8P39-201ENST00000396270 1433 ntBASIC16.28■□□□□ 0.2
PKNOX1P55347 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PKNOX1P55347 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
PKNOX1P55347 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PKNOX1P55347 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PKNOX1P55347 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PKNOX1P55347 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms