Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
FOXA1P55317 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
FOXA1P55317 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
FOXA1P55317 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
FOXA1P55317 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
FOXA1P55317 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA1P55317 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.05■□□□□ 0.16
FOXA1P55317 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA1P55317 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
FOXA1P55317 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.05■□□□□ 0.16
FOXA1P55317 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 POU5F1P6-201ENST00000466990 990 ntBASIC16.05■□□□□ 0.16
FOXA1P55317 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.05■□□□□ 0.16
FOXA1P55317 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA1P55317 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA1P55317 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.05■□□□□ 0.16
FOXA1P55317 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
FOXA1P55317 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.05■□□□□ 0.16
FOXA1P55317 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.05■□□□□ 0.16
FOXA1P55317 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
FOXA1P55317 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.05■□□□□ 0.16
FOXA1P55317 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
FOXA1P55317 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
FOXA1P55317 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
FOXA1P55317 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA1P55317 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
FOXA1P55317 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 AL596257.1-201ENST00000641463 2694 ntBASIC16.04■□□□□ 0.16
FOXA1P55317 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
FOXA1P55317 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA1P55317 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA1P55317 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 HCG4-201ENST00000418983 998 ntBASIC16.04■□□□□ 0.16
FOXA1P55317 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.04■□□□□ 0.16
FOXA1P55317 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
FOXA1P55317 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA1P55317 AC073648.2-201ENST00000510116 352 ntBASIC16.04■□□□□ 0.16
FOXA1P55317 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.04■□□□□ 0.16
FOXA1P55317 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.04■□□□□ 0.16
FOXA1P55317 AC008735.5-201ENST00000623544 497 ntBASIC16.04■□□□□ 0.16
FOXA1P55317 AP001350.2-201ENST00000625104 1094 ntBASIC16.04■□□□□ 0.16
FOXA1P55317 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA1P55317 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
FOXA1P55317 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
FOXA1P55317 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.04■□□□□ 0.16
FOXA1P55317 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA1P55317 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.04■□□□□ 0.16
FOXA1P55317 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
FOXA1P55317 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.03■□□□□ 0.16
FOXA1P55317 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
FOXA1P55317 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXA1P55317 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.03■□□□□ 0.16
FOXA1P55317 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
FOXA1P55317 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.03■□□□□ 0.16
FOXA1P55317 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms