Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC006449.5-201ENST00000610658 2098 ntBASIC16.12■□□□□ 0.17
HNF4AP41235 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 ZNF259P1-201ENST00000407656 1365 ntBASIC16.12■□□□□ 0.17
HNF4AP41235 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.12■□□□□ 0.17
HNF4AP41235 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.11■□□□□ 0.17
HNF4AP41235 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.11■□□□□ 0.17
HNF4AP41235 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.11■□□□□ 0.17
HNF4AP41235 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.11■□□□□ 0.17
HNF4AP41235 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
HNF4AP41235 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
HNF4AP41235 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.11■□□□□ 0.17
HNF4AP41235 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.11■□□□□ 0.17
HNF4AP41235 FAM185BP-201ENST00000443595 716 ntBASIC16.11■□□□□ 0.17
HNF4AP41235 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.11■□□□□ 0.17
HNF4AP41235 AC145285.3-201ENST00000564603 959 ntBASIC16.11■□□□□ 0.17
HNF4AP41235 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.11■□□□□ 0.17
HNF4AP41235 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HNF4AP41235 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.11■□□□□ 0.17
HNF4AP41235 ALOX12P2-203ENST00000570921 1945 ntBASIC16.11■□□□□ 0.17
HNF4AP41235 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.11■□□□□ 0.17
HNF4AP41235 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
HNF4AP41235 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HNF4AP41235 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 AL031731.1-201ENST00000642131 2094 ntBASIC16.1■□□□□ 0.17
HNF4AP41235 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
HNF4AP41235 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.1■□□□□ 0.17
HNF4AP41235 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HNF4AP41235 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HNF4AP41235 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
HNF4AP41235 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
HNF4AP41235 AL022342.1-201ENST00000400363 863 ntBASIC16.1■□□□□ 0.17
HNF4AP41235 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HNF4AP41235 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.1■□□□□ 0.17
HNF4AP41235 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HNF4AP41235 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.1■□□□□ 0.17
HNF4AP41235 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.1■□□□□ 0.17
HNF4AP41235 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.1■□□□□ 0.17
HNF4AP41235 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.1■□□□□ 0.17
HNF4AP41235 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.1■□□□□ 0.17
HNF4AP41235 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.1■□□□□ 0.17
HNF4AP41235 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.1■□□□□ 0.17
HNF4AP41235 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 CYP2T1P-202ENST00000641596 2535 ntBASIC16.1■□□□□ 0.17
HNF4AP41235 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HNF4AP41235 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HNF4AP41235 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HNF4AP41235 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
HNF4AP41235 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 AC012569.1-201ENST00000591191 1524 ntBASIC16.09■□□□□ 0.17
HNF4AP41235 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.09■□□□□ 0.17
HNF4AP41235 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.09■□□□□ 0.17
HNF4AP41235 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HNF4AP41235 GGT4P-201ENST00000623672 1708 ntBASIC16.09■□□□□ 0.17
HNF4AP41235 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms