Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.59■□□□□ 0.57
CIITAP33076 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CIITAP33076 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.59■□□□□ 0.57
CIITAP33076 PMS2P2-201ENST00000425039 1128 ntBASIC18.59■□□□□ 0.57
CIITAP33076 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.59■□□□□ 0.57
CIITAP33076 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.59■□□□□ 0.57
CIITAP33076 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.59■□□□□ 0.57
CIITAP33076 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CIITAP33076 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.59■□□□□ 0.57
CIITAP33076 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.59■□□□□ 0.57
CIITAP33076 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.59■□□□□ 0.57
CIITAP33076 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CIITAP33076 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CIITAP33076 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CIITAP33076 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.59■□□□□ 0.57
CIITAP33076 ALOX12P2-203ENST00000570921 1945 ntBASIC18.59■□□□□ 0.57
CIITAP33076 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CIITAP33076 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
CIITAP33076 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CIITAP33076 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.58■□□□□ 0.57
CIITAP33076 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CIITAP33076 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.58■□□□□ 0.57
CIITAP33076 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.58■□□□□ 0.57
CIITAP33076 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
CIITAP33076 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.58■□□□□ 0.57
CIITAP33076 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CIITAP33076 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.58■□□□□ 0.57
CIITAP33076 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CIITAP33076 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.58■□□□□ 0.57
CIITAP33076 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.58■□□□□ 0.56
CIITAP33076 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CIITAP33076 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.58■□□□□ 0.56
CIITAP33076 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.58■□□□□ 0.56
CIITAP33076 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.58■□□□□ 0.56
CIITAP33076 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CIITAP33076 RARRES2P9-201ENST00000565168 469 ntBASIC18.58■□□□□ 0.56
CIITAP33076 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.58■□□□□ 0.56
CIITAP33076 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CIITAP33076 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CIITAP33076 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
CIITAP33076 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
CIITAP33076 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CIITAP33076 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CIITAP33076 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CIITAP33076 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CIITAP33076 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CIITAP33076 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CIITAP33076 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.57■□□□□ 0.56
CIITAP33076 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CIITAP33076 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CIITAP33076 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CIITAP33076 HLA-H-201ENST00000383620 1096 ntBASIC18.57■□□□□ 0.56
CIITAP33076 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CIITAP33076 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.57■□□□□ 0.56
CIITAP33076 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.57■□□□□ 0.56
CIITAP33076 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CIITAP33076 AC069262.1-201ENST00000539058 672 ntBASIC18.57■□□□□ 0.56
CIITAP33076 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.57■□□□□ 0.56
CIITAP33076 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.57■□□□□ 0.56
CIITAP33076 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.57■□□□□ 0.56
CIITAP33076 AC093028.1-201ENST00000622998 982 ntBASIC18.57■□□□□ 0.56
CIITAP33076 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
CIITAP33076 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CIITAP33076 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CIITAP33076 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.57■□□□□ 0.56
CIITAP33076 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CIITAP33076 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.57■□□□□ 0.56
CIITAP33076 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.57■□□□□ 0.56
CIITAP33076 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CIITAP33076 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CIITAP33076 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CIITAP33076 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.56■□□□□ 0.56
CIITAP33076 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CIITAP33076 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.56■□□□□ 0.56
CIITAP33076 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.56■□□□□ 0.56
CIITAP33076 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.56■□□□□ 0.56
CIITAP33076 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms