Protein–RNA interactions for Protein: P16619

CCL3L1, C-C motif chemokine 3-like 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL3L1P16619 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CCL3L1P16619 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCL3L1P16619 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCL3L1P16619 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCL3L1P16619 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCL3L1P16619 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CCL3L1P16619 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CCL3L1P16619 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCL3L1P16619 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
CCL3L1P16619 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 AC016027.1-202ENST00000607927 1699 ntBASIC13.67□□□□□ -0.22
CCL3L1P16619 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CCL3L1P16619 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.67□□□□□ -0.22
CCL3L1P16619 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.67□□□□□ -0.22
CCL3L1P16619 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CCL3L1P16619 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 AC092474.2-201ENST00000424288 719 ntBASIC13.67□□□□□ -0.22
CCL3L1P16619 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CCL3L1P16619 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.67□□□□□ -0.22
CCL3L1P16619 AC099522.2-201ENST00000607001 744 ntBASIC13.67□□□□□ -0.22
CCL3L1P16619 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.67□□□□□ -0.22
CCL3L1P16619 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CCL3L1P16619 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CCL3L1P16619 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCL3L1P16619 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC13.67□□□□□ -0.22
CCL3L1P16619 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CCL3L1P16619 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CCL3L1P16619 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 PCDH8P1-201ENST00000428983 2773 ntBASIC13.66□□□□□ -0.22
CCL3L1P16619 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
CCL3L1P16619 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.66□□□□□ -0.22
CCL3L1P16619 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.66□□□□□ -0.22
CCL3L1P16619 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CCL3L1P16619 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CCL3L1P16619 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.66□□□□□ -0.22
CCL3L1P16619 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CCL3L1P16619 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.66□□□□□ -0.22
CCL3L1P16619 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.66□□□□□ -0.22
CCL3L1P16619 DNAJB3-201ENST00000446806 729 ntBASIC13.66□□□□□ -0.22
CCL3L1P16619 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CCL3L1P16619 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.66□□□□□ -0.22
CCL3L1P16619 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CCL3L1P16619 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.66□□□□□ -0.22
CCL3L1P16619 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.66□□□□□ -0.22
CCL3L1P16619 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
CCL3L1P16619 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.66□□□□□ -0.22
CCL3L1P16619 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
CCL3L1P16619 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13.66□□□□□ -0.22
CCL3L1P16619 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
CCL3L1P16619 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.66□□□□□ -0.22
CCL3L1P16619 C20orf181-201ENST00000623918 480 ntBASIC13.66□□□□□ -0.22
CCL3L1P16619 AC092902.6-201ENST00000641783 218 ntBASIC13.66□□□□□ -0.22
CCL3L1P16619 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCL3L1P16619 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms