Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.22■□□□□ 0.19
PCNAP12004 AC006277.1-201ENST00000624348 1610 ntBASIC16.22■□□□□ 0.19
PCNAP12004 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PCNAP12004 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.22■□□□□ 0.19
PCNAP12004 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PCNAP12004 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PCNAP12004 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.22■□□□□ 0.19
PCNAP12004 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.22■□□□□ 0.19
PCNAP12004 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.21■□□□□ 0.19
PCNAP12004 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PCNAP12004 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PCNAP12004 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.21■□□□□ 0.19
PCNAP12004 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.21■□□□□ 0.19
PCNAP12004 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.21■□□□□ 0.19
PCNAP12004 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.21■□□□□ 0.19
PCNAP12004 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.21■□□□□ 0.19
PCNAP12004 AL160237.2-201ENST00000556165 472 ntBASIC16.21■□□□□ 0.19
PCNAP12004 AC008667.4-201ENST00000607370 168 ntBASIC16.21■□□□□ 0.19
PCNAP12004 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 PGM5P2-202ENST00000637225 1043 ntBASIC16.21■□□□□ 0.19
PCNAP12004 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.21■□□□□ 0.19
PCNAP12004 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.21■□□□□ 0.19
PCNAP12004 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCNAP12004 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PCNAP12004 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.21■□□□□ 0.18
PCNAP12004 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCNAP12004 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
PCNAP12004 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.21■□□□□ 0.18
PCNAP12004 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCNAP12004 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.2■□□□□ 0.18
PCNAP12004 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.2■□□□□ 0.18
PCNAP12004 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
PCNAP12004 AL031284.1-201ENST00000419297 478 ntBASIC16.2■□□□□ 0.18
PCNAP12004 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.2■□□□□ 0.18
PCNAP12004 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 MPDU1-223ENST00000582151 728 ntBASIC16.2■□□□□ 0.18
PCNAP12004 AL049840.3-201ENST00000602669 611 ntBASIC16.2■□□□□ 0.18
PCNAP12004 AC104692.2-201ENST00000603054 253 ntBASIC16.2■□□□□ 0.18
PCNAP12004 REXO1L3P-201ENST00000622202 1288 ntBASIC16.2■□□□□ 0.18
PCNAP12004 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
PCNAP12004 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.2■□□□□ 0.18
PCNAP12004 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PCNAP12004 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCNAP12004 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCNAP12004 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCNAP12004 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCNAP12004 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.19■□□□□ 0.18
PCNAP12004 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.19■□□□□ 0.18
PCNAP12004 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PCNAP12004 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCNAP12004 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
PCNAP12004 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCNAP12004 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCNAP12004 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCNAP12004 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.19■□□□□ 0.18
PCNAP12004 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
PCNAP12004 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCNAP12004 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.19■□□□□ 0.18
PCNAP12004 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.19■□□□□ 0.18
PCNAP12004 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
PCNAP12004 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms